Index A | C | E | L | M | P | R | S | W A apply_gene_filtering() (in module harreman.tools) average_local_correlation_plot() (in module harreman.plots) C calculate_module_scores() (in module harreman.hotspot) calculate_super_module_scores() (in module harreman.hotspot) compute_cell_communication() (in module harreman.tools) compute_ct_cell_communication() (in module harreman.tools) compute_ct_interacting_cell_scores() (in module harreman.tools) compute_gene_pairs() (in module harreman.tools) compute_interacting_cell_scores() (in module harreman.tools) compute_interaction_module_correlation() (in module harreman.tools) compute_knn_graph() (in module harreman.tools) compute_local_autocorrelation() (in module harreman.hotspot) compute_local_correlation() (in module harreman.hotspot) compute_top_scoring_modules() (in module harreman.hotspot) create_modules() (in module harreman.hotspot) E extract_interaction_db() (in module harreman.preprocessing) L load_metabolic_genes() (in module harreman.hotspot) load_slide_seq_human_lung_dataset() (in module harreman.datasets) load_visium_mouse_colon_dataset() (in module harreman.datasets) local_correlation_plot() (in module harreman.plots) M module_score_correlation_plot() (in module harreman.plots) P plot_ct_interacting_cell_scores() (in module harreman.plots) plot_interacting_cell_scores() (in module harreman.plots) R read_h5ad() (in module harreman) S select_significant_interactions() (in module harreman.tools) setup_deconv_adata() (in module harreman.preprocessing) W write_h5ad() (in module harreman)
