harreman.plots.local_correlation_plot

harreman.plots.local_correlation_plot#

harreman.plots.local_correlation_plot(adata, mod_cmap='tab10', vmin=-10, vmax=10, z_cmap='RdBu_r', yticklabels=False, use_super_modules=False, show=True)[source]#

Plot a hierarchical-clustered heatmap of pairwise correlation Z-scores.

Parameters:

  • adata (AnnData) – AnnData object containing: - uns['lc_zs']: DataFrame of pairwise correlation Z-scores - uns['modules'] or uns['super_modules'] - uns['linkage']: scipy linkage matrix

  • mod_cmap (str, default "tab10") – Colormap for module color annotations.

  • vmin (float, default -10 and 10, respectively) – Limits for the heatmap color scale.

  • vmax (float, default -10 and 10, respectively) – Limits for the heatmap color scale.

  • z_cmap (str, default "RdBu_r") – Colormap for the Z-score heatmap.

  • yticklabels (bool, default False) – Whether to show y-axis tick labels.

  • use_super_modules (bool, default False) – Whether to use uns['super_modules'] instead of uns['modules'].

  • show (bool, default True) – If True, display the plot.