Documentation#
Harreman (Basque for “receive” and “give”) is a Python package for metabolic cell-cell communication inference in spatial transcriptomics data. Harreman is interoperable with AnnData objects and it is developed and maintained by the Yosef Lab at the Weizmann Institute of Science.
Installation
Check out the installation guide.
User guide
The user guide provides mathematical descriptions of the statistical models implemented in Harreman and connects the math with the code.
Tutorials
Learn by following example applications of Harreman.
API reference
The API reference contains a detailed description of the Harreman API.
Release Notes
Follow the latest changes to Harreman.
GitHub
Checkout our GitHub for the latest developments.